Scientific Journal

Genetic Parameters of Some Traits of Amygdalus scoparia Using the REML Method

Document Type : Original Article

Authors

1 Department of Natural Resources and Desert Studies, Yazd University, Yazd, Iran

2 Department of Animal Science, Faculty of Agriculture, University of Kurdistan, Sanandaj, Iran

Abstract
In most breeding programs, genetic diversity is considered a fundamental principle and condition for selection. In other words, understanding genetic diversity and estimating genetic parameters such as heritability, genetic correlation, and variance components of growth traits is a necessary condition for breeding. Restricted maximum likelihood (REML) is one of the important methods introduced for analyzing data, and it does not have the limitations of variance analysis for unbalanced and heterogeneous data, such as negative estimates, lack of uniqueness in estimates, lack of appropriate distributional properties, and lack of a useful method for comparing different types of estimates. This method maximizes the non-stationary part of the likelihood function and has the advantage of assigning degrees of freedom to the fixed part of the model, which leads to unbiasedness. It can also be implemented on data that have been affected by selection and deletion; While one of the assumptions of variance analysis is that the data obtained must be random. Other applications of this method compared to conventional methods for estimating variance components include directly providing genotypic correlations with greater accuracy. Despite the correct and more precise estimation of genetic parameters with these estimators, this method has been used to estimate heritability and genetic correlation in a limited number of domestic studies. In the present study, the estimation of genetic parameters including genetic correlation and heritability of the Amygdalus scoparia variety was carried out by evaluating seedlings obtained from seeds of two populations of this variety in Kerman province using the REML method, so that ultimately, by identifying the structure, diversity, and existing genetic potential, better decisions can be made for the management and improvement of this valuable variety and the production of more desirable seedlings in the study area.

Keywords


Ansari, A. and Gharaghani, A. (2019). A comparative study of genetic diversity, heritability and inter- relationships of tree and nut attributes between Prunus scoparia and P. elaeagnifolia using multivariate statistical analysis. International Journal of Horticultural Science and Technology, 6(1): 137-150.
Astarki, H., Sharifi, P. and Sheikh, F. (2019). Evaluation of genetic correlation and heritability of some traits in bean genotypes using restricted maximum likelihood (REML) estimator. Plant Genetic Researches, 6(2): 111- 128 (In Persian). https://doi.org/10.29252/pgr.6.2.111
Babaiyan, M., Azadfar, D. and Pakparvar, M. (2019). Effect of drought stress induced by polyethylene glycol (PEG-6000) on seed germinating traits of seven provenances of wild almond (Amygdalus scoparia Spach.) in the Fars province, Iran. Iranian Journal of Forest and Poplar Research, 27(3): 288-299 (In Persian).
Chaieb, N., González, J.L., López-Mesas, M., Bouslama, M. and Valiente, M. (2011). Polyphenols content and antioxidant capacity of thirteen faba bean (Vicia faba L.) genotypes cultivated in Tunisia. Food Research International, 44(4): 970-977. https://doi.org/10.1016/j.foodres.2011.02.026
Chang, W.Y., Wang, S., Gaston, C., Cool, J., An, H. and Thomas, B.R. (2019). Economic evaluations of tree improvement for planted forests: a systematic review. BioProducts Business, 4(1): 1-14.
Crespel, A., Lindström, J., Elmer, K.R. and Killen, S.S. (2024). Evolutionary relationships between metabolism and behavior require genetic correlations. Philosophical Transactions of the Royal Society B, 379(1896): 20220481. https://doi.org/10.1098/rstb.2022.0481
Dewoody, J., Trewin, H. and Taylor, G. (2015). Genetic and morphological differentiation in Populus nigra L.: isolation by colonization or isolation by adaptation? Molecular Ecology, 24(11): 2641-2655. https://doi.org/10.1111/mec.13192
Emam, M., Asadi-Corom, F., Mirzaie-Nodoushan, H., Jaimand, K. and Ghamari-Zare, A. (2014). Investigation of genetic variation of Amygdalus scoparia L. genotypes using some morphological, biochemical and seed storage proteins characteristics, Iranian Journal of Rangelands and Forests Plant Breeding and Genetic Research, 22(1): 34-42. (In Persian).
Ennos, R.A. (2015). Resilience of forests to pathogens: an evolutionary ecology perspective. Forestry: An International Journal of Forest Research, 88(1): 41-52. https://doi.org/10.1093/forestry/cpu048
Griffiths, A., Doebley, J., Peichel, C. and Wassarman, D. (2015). Introduction to Genetic Analysis. W.H Freeman, New York, USA.
Hajnajari, H., Chashnidel, B., Vahdati, K., Ebrahimi, M., Nabipour, A. and Fallahi, E. (2012). Heritability of morphological traits in apple early-ripening full-sib and half-sib offspring and its potential use for assisted selection. HortScience, 47(3): 328-333. https://doi.org/10.21273/HORTSCI.47.3.328
Hartl, D.L., Jones, E.W., Hartl, D.L. and Jones, E.W. (1998). Genetics: Principles and Analysis. Gereth Stevns, New York, USA.
Isaac-Renton, M., Stoehr, M., Statland, C.B. and Woods, J. (2020). Tree breeding and silviculture: Douglas- fir volume gains with minimal wood quality loss under variable planting densities. Forest Ecology and Management, 465: 118094. https://doi.org/10.1016/j.foreco.2020.118094
Jahanbazy Goujani, H., Hosseini Nasr, S.M., Sagheb-Talebi, Kh. and Hojjati, S.M. (2013). Effect of drought stress induced by altitude, on four wild almond species. Iranian Journal of Forest and Poplar Research, 21(2): 373-386 (In Persian)
Jansson, G., Hansen, J.K., Haapanen, M., Kvaalen, H. and Steffenrem, A. (2017). The genetic and economic gains from forest tree breeding programs in Scandinavia and Finland. Scandinavian Journal of Forest Research, 32: 273-286. https://doi.org/10.1080/02827581.2016.1242770
Jayawickrama, K.J. and Ye, T.Z. (2021). Heritability and type B genetic correlation estimates for coastal douglas-fir in the US Pacific Northwest: trends and insights from 906 first-generation and second-cycle tests. Scandinavian Journal of Forest Research, 36(2-3): 83-97. https://doi.org/10.1080/02827581.2021.1890815
Khodadadi, M., Sorkhilalehloo, B., Mortazavian, S.M.M., Abbasi Kohpalekani, J., Bagheri, M. and Karbasi, M. (2023). Evaluating the genetic diversity of Iranian endemic eggplant accessions for some morphological traits. Plant Genetic Researches, 10(1): 79-94 (In Persian).
Lebedev, V.G., Lebedeva, T.N., Chernodubov, A.I. and Shestibratov, K.A. (2020). Genomic selection for forest tree improvement: methods, achievements and perspectives. Forests, 11: 1-36. https://doi.org/10.3390/f11111190
Lindhout, P. (2002). The perspectives of polygenic resistance in breeding for durable disease resistance. Euphytica, 124: 217-26. https://doi.org/10.1023/A:1015686601404
Liu, J., Sun, Y., Liu, W., Tan, Z., Jiang, J. and Li, Y. (2021). Association of spectroscopically determined leaf nutrition related traits and breeding selection in Sassafras tzumu. Plant Methods, 17: 1-10. https://doi.org/10.1186/s13007-021-00734-5
McKinney, L.V., Nielsen, L.R., Hansen, J.K. and Kjaer, E.D. (2011). Presence of natural genetic resistance in Fraxinus excelsior (Oleaceae) to Chalarafraxinea (Ascomycota): an emerging infectious disease. Heredity, 106: 788-97. https://doi.org/10.1038/hdy.2010.119
Mirhosseini, A., Tabandeh Saravi, A., Espahbodi, K. and Enayati, B. (2020). Estimation of genetic correlation and heritability of characteristics of Haloxylon persicum Bge. in the seed orchard of Yazd Province, Iranian Journal of Forest and Poplar Research, 27(4): 475-484 (In Persian).
Rahimi, J., Amini, F., Ramshini, H., Abedi, M. and Lotfi, M. (2023). Estimation of gene action and genetic parameters for morphological traits in F1, F2 and F3 generations of tomato (Lycopersicum esculantum L.). Plant Genetic Researches, 9(2): 71-82 (In Persian).
Rouhi, V. and Rafiei, Z. (2014). Effect of gibberellic acid and scarification on seed germination in four almond species, Journal of Horticulture Science, 27(4): 424-432 (In Persian).
Saberi, F., Kiani, B., Omidvar, E., Azimzadeh, H. and Esmaeilpour, M. (2023). Evaluating the plantation success by mountain almond (Amygdalus scoparia Spach.) and its effects on vegetation and soil in Arjan habitats of Jamal Beyg region, Fars province. Water and Soil Management and Modeling, 3(4): 227-240 (In Persian).
Sebbenn, A.M., Arantes, F.C., Boas, O.V. and Freitas, M.L.M. (2008). Genetic variation in an international provenance-progeny test of Pinus caribaea Mor. var. Bahamensis Bar. et Gol., in Sao Paulo, Brazil. Silvae Genetica, 57: 181-187. https://doi.org/10.1515/sg-2008-0028
Sharifi, P. (2014). Correlation and path coefficient analysis of yield and yield component in some of broad bean (Vicia faba L.) genotypes. Genetika, 46(3): 905-914. https://doi.org/10.2298/GENSR1403905S
Stoehr, M., Webber, J. and Woods, J. (2004). Protocol for rating seed orchard seed lots in British Columbia: quantifying genetic gain and diversity. Forestry, 77: 297-303. https://doi.org/10.1093/forestry/77.4.297
Tabandeh Saravi, A. (2017). Genetics and Breeding in Forest Trees. Hagshenas Publications, Rasht, IR (In Persian).
Tabandeh Saravi, A. and Nadi, H. (2018). Effect of elevation and genotype on leaf morphological variation in Pistacia atlantica subsp. mutica in southern Yazd province forest. Arid Biome Scientific and Research Journal, 8(2): 15-25 (In Persian). https://doi.org/10.29252/aridbiom.2019.1401
Tabandeh Saravi, A., Mirhosseini, A., Espahbodi, K. and Enayati, B. (2021). Estimation of Genetic Parameters of Haloxylon ammodendron by REML Method and Repeatability Model. Iranian Journal of Rangelands and Forests Plant Breeding and Genetic Research, 28(2): 252-267 (In Persian).
Tabandeh Saravi, A., Tabari, M., Espahbodi, K., Mirzaie nodoushan, H. and Enayati, B. (2008). Phenotypic correlation between selected characters of parent trees and Progenies in wild service tree (Sorbus torminalis L.) Crantz. Asian Journal of Plant Sciences, 7(6): 579-583. https://doi.org/10.3923/ajps.2008.579.583
Tabandeh Saravi, A., Tabari, M., Mirzaei Nadoushan, H. and Espahbodi, K. (2007). Heritability of some characteristics of Sorbus torminalis seedling. Pakistan Journal of Biological Sciences., 10: 2760-2763. https://doi.org/10.3923/pjbs.2007.2760.2763
White, T.L., Adams, W.T. and Neale, D.B. (2007). Forest Genetics. CABI Publishing: UK. https://doi.org/10.1079/9781845932855.0000
Wu, D., Shu, M. and Moran, E.V. (2023). Heritability of plastic trait changes in drought‐exposed ponderosa pine seedlings. Ecosphere, 14(3): 4454. https://doi.org/10.1002/ecs2.4454
Zolfaghari, R., Karimi Haji Pomagh, K. and Fayyaz, P. (2013). Evaluation of genetic variability of some morpho-physiological traits in brant's oak (Quercus brantii Lindl.). Iranian Journal of Rangelands and Forest Plant Breeding and Genetic Research, 21(1): 103-118 (In Persian).